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Publications by Anders Eklund

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Journal papers

2017
Anders Eklund, Martin A Lindqvist, Mattias Villani, "A Bayesian Heteroscedastic GLM with Application to fMRI Data with Motion Spikes", NeuroImage, (Epub ahead of print), 2017.
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Anders Eklund, Thomas Nichols, Hans Knutsson, "Reply to BROWN AND BEHRMANN, COX ET AL., AND KESSLER ET AL.: Data and code sharing is the way forward for fMRI", Proceedings of the National Academy of Sciences of the United States of America, 1-2, 2017.
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Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Michel Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Cristopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russel A. Poldrack, "BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods", PloS Computational Biology, 13(3), 2017.
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Thomas E. Nichols, Anders Eklund, Hans Knutsson, "A defense of using resting state fMRI as null data for estimating false positive rates", Cognitive Neuroscience, 8(3): 144-145, 2017.
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Per Sidén, Anders Eklund, David Bolin, Mattias Villani, "Fast Bayesian whole-brain fMRI analysis with spatial 3D priors", NeuroImage, 146: 211-225, 2017.
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2016
Anders Eklund, Thomas Nichols, Hans Knutsson, "Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates", Proceedings of the National Academy of Sciences of the United States of America, 113(28): 7900-7905, 2016.
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2012
Anders Eklund, Mats Andersson, Camilla Josephson, Magnus Johannesson, Hans Knutsson, "Does Parametric fMRI Analysis with SPM Yield Valid Results? - An Empirical Study of 1484 Rest Datasets", NeuroImage, 61(3): 565-578, 2012.
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Anders Eklund, Mats Andersson, Hans Knutsson, "fMRI Analysis on the GPU - Possibilities and Challenges", Computer Methods and Programs in Biomedicine, 105(2): 145-161, 2012.
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2011
Anders Eklund, Mats Andersson, Hans Knutsson, "Fast Random Permutation Tests Enable Objective Evaluation of Methods for Single Subject fMRI Analysis", International Journal of Biomedical Imaging, 2011.
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Anders Eklund, Mats Andersson, Hans Knutsson, "True 4D Image Denoising on the GPU", International Journal of Biomedical Imaging, 2011, 2011.
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Conference papers

2017
Olivier Cros, Michael Gaihede, Anders Eklund, Hans Knutsson, "Surface and curve skeleton from a structure tensor analysis applied on mastoid air cells in human temporal bones", IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), 2017, International Symposium on Biomedical Imaging. Proceedings, 270-274, 2017.
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Jens Sjölund, Anders Eklund, Evren Özarslan, Hans Knutsson, "Gaussian process regression can turn non-uniform and undersampled diffusion MRI data into diffusion spectrum imaging", IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), 2017, International Symposium on Biomedical Imaging. Proceedings, 778-782, 2017.
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2016
Olivier Cros, Anders Eklund, Michael Gaihede, Hans Knutsson, "Enhancement of micro-channels within the human mastoid bone based on local structure tensor analysis", Image Proceessing Theory, Tools and Apllications, International Conference on Image Processing Theory Tools and Applications (IPTA), 2016.
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2015
Anders Eklund, Thomas Nichols, Mats Andersson, Hans Knutsson, "Empirically Investigating the Statistical Validity of SPM, FSL and AFNI for Single Subject fMRI Analysis", 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), IEEE International Symposium on Biomedical Imaging, 1376-1380, 2015.
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2012
Anders Eklund, Mats Andersson, Hans Knutsson, "4D Medical Image Processing with CUDA", Nvidia GPU Technology Conference, San Jose, USA, May 14-17, 2012., 2012.
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Anders Eklund, Mats Andersson, Hans Knutsson, "A Functional Connectivity Inspired Approach to Non-Local fMRI Analysis", Proceedings of the 19th IEEE International Conference on Image Processing (ICIP), 2012, Image Processing, Vol. 2012, 1245-1248, 2012.
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2011
Daniel Forsberg, Anders Eklund, Mats Andersson, Hans Knutsson, "Phase-Based Non-Rigid 3D Image Registration - From Minutes to Seconds Using CUDA", Joint MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging, HP-MICCAI, September 22nd, Toronto, Canada, 2011.
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Daniel Forsberg, Anders Eklund, Mats Andersson, Hans Knutsson, "Non-Rigid Volume Registration - A CUDA-based GPU Implementation of the Morphon", SSBA Symposium on Image Analysis, March 17-18, Linköping, Sweden, 2011.
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Anders Eklund, Mats Andersson, Hans Knutsson, "Improving CCA based fMRI Analysis by Covariance Pooling - Using the GPU for Statistical Inference", Joint MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging, HP-MICCAI, September 22nd, 2011, Toronto, Canada, 2011.
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Anders Eklund, Ola Friman, Mats Andersson, Hans Knutsson, "A GPU accelerated interactive interface for exploratory functional connectivity analysis of FMRI data", Image Processing (ICIP), 2011, International Conference on Image Processing. Proceedings, 1589-1592, 2011.
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Anders Eklund, Daniel Forsberg, Mats Andersson, Hans Knutsson, "Using the Local Phase of the Magnitude of the Local Structure Tensor for Image Registration", Image Analysis, Lecture Notes in Computer Science, Vol. 6688/2011, 414-423, 2011.
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Anders Eklund, Ola Friman, Mats Andersson, Hans Knutsson, "Comparing fMRI Activity Maps from GLM and CCA at the Same Significance Level by Fast Random Permutation Tests on the GPU", SSBA Symposium on Image Analysis, March 17-18, Linköping, Sweden, 2011.
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2010
Anders Eklund, Mats Andersson, Marcel Warntjes, Hans Knutsson, "Phase Based Volume Registration on the GPU with Application to Quantitative MRI", SSBA Symposium on Image Analysis, March 11-12, Uppsala, Sweden, 2010.
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Tan Khoa Nguyen, Henrik Ohlsson, Anders Eklund, Frida Hernell, Patric Ljung, Camilla Forsell, Mats Andersson, Hans Knutsson, Anders Ynnerman, "Concurrent Volume Visualization of Real-Time fMRI", Proceedings of the 8th IEEE/EG International Symposium on Volume Graphics, Eurographics/IEEE VGTC Symposium on Volume Graphics, Vol. VG10, 53-60, 2010.
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Anders Eklund, Mats Andersson, Henrik Ohlsson, Anders Ynnerman, Hans Knutsson, "A Brain Computer Interface for Communication Using Real-Time fMRI", Proceedings of the 20th International Conference on Pattern Recognition, International Conference on Pattern Recognition, 3665-3669, 2010.
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Anders Eklund, Marcel Warntjes, Mats Andersson, Hans Knutsson, "Fast Phase Based Registration for Robust Quantitative MRI", Proceedings of the annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), 2010.
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Anders Eklund, Mats Andersson, Hans Knutsson, "Phase Based Volume Registration Using CUDA", Acoustics Speech and Signal Processing (ICASSP), 2010, IEEE International Conference on Acoustics, Speech and Signal Processing. Proceedings, Vol. 2010, 658-661, 2010.
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2009
Anders Eklund, Henrik Ohlsson, Mats Andersson, Joakim Rydell, Anders Ynnerman, Hans Knutsson, "Balancing an Inverted Pendulum by Thinking A Real-Time fMRI Approach", SSBA Symposium on Image Analysis, 18-20 March, Halmstad, Sweden, 2009, 2009.
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Anders Eklund, Henrik Ohlsson, Mats Andersson, Joakim Rydell, Anders Ynnerman, Hans Knutsson, "Using Real-Time fMRI to Control a Dynamical System", ISMRM 17th Scientific Meeting & Exhibition, 2009.
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Anders Eklund, Henrik Ohlsson, Mats Andersson, Joakim Rydell, Anders Ynnerman, Hans Knutsson, "Using Real-Time fMRI to Control a Dynamical System by Brain Activity Classification", Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009, Lecture Notes in Computer Science, Vol. 5761, 1000-1008, 2009.
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Theses

2012
Anders Eklund, "Computational Medical Image Analysis: With a Focus on Real-Time fMRI and Non-Parametric Statistics", Linköping Studies in Science and Technology. Dissertations, No. 1439, 2012.
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2010
Anders Eklund, "Signal Processing for Robust and Real-Time fMRI With Application to Brain Computer Interfaces", Linköping Studies in Science and Technology. Thesis, No. 1432, 2010.
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Reports

2009
Anders Eklund, Henrik Ohlsson, Mats Andersson, Joakim Rydell, Anders Ynnerman, Hans Knutsson, "Using Real-Time fMRI to Control a Dynamical System", LiTH-ISY-R, No. 2879, 2009.
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Student theses

2007
Anders Eklund, "Image coding with H.264 I-frames", Student thesis, LiTH-ISY-EX--07/3902--SE, 2007.
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The publication list is extracted from the DiVA - Academic Archive Online - publishing system. The extraction software is developed by Johan Wiklund.

Page responsible: Anders Eklund
Last updated: 2012-01-05